Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01438.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32


Found at i:479 original size:28 final size:27

Alignment explanation


    Indices: 437--510  Score: 78
    Period size: 26  Copynumber: 2.7  Consensus size: 27

        427 AAAAGTAGCT

                    * *         *       
        437 AAATTACTATAATACCCCTATGTATGGA
          1 AAATTACTGTTATACCCCTAAG-ATGGA

                                  *  * 
        465 AAATTACTGTTATACCCC-AAGGTGTA
          1 AAATTACTGTTATACCCCTAAGATGGA

                   *            
        491 AAATTACCGTTATACCCCTA
          1 AAATTACTGTTATACCCCTA

        511 GGGTTAATTT


Statistics
Matches: 39,  Mismatches: 6, Indels: 3
        0.81            0.12        0.06

Matches are distributed among these distances:
  26   20  0.51
  27    3  0.08
  28   16  0.41

ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31


Consensus pattern (27 bp):   
AAATTACTGTTATACCCCTAAGATGGA

Found at i:681 original size:28 final size:27

Alignment explanation


    Indices: 615--700  Score: 104
    Period size: 27  Copynumber: 3.2  Consensus size: 27

        605 GAGGAAGCGT

                      *        *        
        615 TCTGGTGGCTATGCCACAAATATCTG-A
          1 TCTGGTGGCTCTGCCAC-ATTATCTGTA

                                        
        642 TCTGGTGGCTCTGCCACGATTATCTGTA
          1 TCTGGTGGCTCTGCCAC-ATTATCTGTA

                   *     *             
        670 TCTGGTGACTCTGTCACATTATCTGT-
          1 TCTGGTGGCTCTGCCACATTATCTGTA

                 
        696 TCTGG
          1 TCTGG

        701 CAGCCATGCT


Statistics
Matches: 53,  Mismatches: 5, Indels: 3
        0.87            0.08        0.05

Matches are distributed among these distances:
  26    5  0.09
  27   32  0.60
  28   16  0.30

ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36


Consensus pattern (27 bp):   
TCTGGTGGCTCTGCCACATTATCTGTA
Done.