Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01080.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4098
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:554 original size:13 final size:13

Alignment explanation


    Indices: 524--553  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        514 TGTGTGAGGG

                         
        524 TTTTTGCTTTTGT
          1 TTTTTGCTTTTGT

                         
        537 TTTTTG-TTTTGT
          1 TTTTTGCTTTTGT

                 
        549 TTTTT
          1 TTTTT

        554 TAACAGTAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   11  0.65
  13    6  0.35

ACGTcount: A:0.00, C:0.03, G:0.13, T:0.83


Consensus pattern (13 bp):   
TTTTTGCTTTTGT
Done.