Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01446.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5115
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30


Found at i:4710 original size:13 final size:13

Alignment explanation


    Indices: 4692--4719  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       4682 TGAAAATTCG

                         
       4692 TTAATGGTACATT
          1 TTAATGGTACATT

                         
       4705 TTAATGGTACATT
          1 TTAATGGTACATT

              
       4718 TT
          1 TT

       4720 CCCCTATATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50


Consensus pattern (13 bp):   
TTAATGGTACATT
Done.