Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01457.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6918
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38


Found at i:6133 original size:34 final size:34

Alignment explanation


    Indices: 6090--6156  Score: 134
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       6080 AGAAAGTCTA

                                              
       6090 TTTCTTTCAGTATTTGAAACTATGGATCACGTTT
          1 TTTCTTTCAGTATTTGAAACTATGGATCACGTTT

                                             
       6124 TTTCTTTCAGTATTTGAAACTATGGATCACGTT
          1 TTTCTTTCAGTATTTGAAACTATGGATCACGTT

       6157 CCTTATTACT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46


Consensus pattern (34 bp):   
TTTCTTTCAGTATTTGAAACTATGGATCACGTTT
Done.