Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01459.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 255
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38


Found at i:200 original size:15 final size:16

Alignment explanation


    Indices: 163--216  Score: 51
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        153 CATTCGAGGG

                              
        163 ATATCCCGG-TTCGTTGT
          1 ATATCCCGGATTCG--GT

                    *       
        180 -TATCCCGTATT-GGT
          1 ATATCCCGGATTCGGT

                     *      
        194 ATATCCCGGCTTCGGT
          1 ATATCCCGGATTCGGT

                   
        210 ATATCCC
          1 ATATCCC

        217 ATTCTGGGAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 7
        0.76            0.07        0.17

Matches are distributed among these distances:
  14    2  0.06
  15    9  0.29
  16   18  0.58
  17    2  0.06

ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37


Consensus pattern (16 bp):   
ATATCCCGGATTCGGT
Done.