Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01464.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 481

Length: 802
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:627 original size:70 final size:71

Alignment explanation


    Indices: 541--682  Score: 250
    Period size: 70  Copynumber: 2.0  Consensus size: 71

        531 CTGGCAAGGT

                                                                 *      *    
        541 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCA-TTTTAATCTTGTCTTATGCCCTGTGA
          1 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA

                  
        605 ATACCA
         66 ATACCA

                                                        *                    
        611 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTATTCTTGTCTAATGCCCCGTGA
          1 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA

                  
        676 ATACCA
         66 ATACCA

             
        682 T
          1 T

        683 CATATTTTAG


Statistics
Matches: 68,  Mismatches: 3, Indels: 1
        0.94            0.04        0.01

Matches are distributed among these distances:
  70   38  0.56
  71   30  0.44

ACGTcount: A:0.27, C:0.26, G:0.07, T:0.40


Consensus pattern (71 bp):   
TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA
ATACCA
Done.