Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01470.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2040
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30


Found at i:1950 original size:10 final size:11

Alignment explanation


    Indices: 1927--1960  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       1917 CATTCACTAG

                       
       1927 TTATTTTTTCT
          1 TTATTTTTTCT

                       
       1938 TTATTTTTT-T
          1 TTATTTTTTCT

                  *    
       1948 TTATTTATTCT
          1 TTATTTTTTCT

              
       1959 TT
          1 TT

       1961 CATTCTTGAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  10    9  0.43
  11   12  0.57

ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82


Consensus pattern (11 bp):   
TTATTTTTTCT
Done.