Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01484.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32


Found at i:1172 original size:12 final size:12

Alignment explanation


    Indices: 1155--1179  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1145 CAGAGGCTAT

                        
       1155 TAACAATATTTA
          1 TAACAATATTTA

                        
       1167 TAACAATATTTA
          1 TAACAATATTTA

             
       1179 T
          1 T

       1180 GTTATAAAAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44


Consensus pattern (12 bp):   
TAACAATATTTA
Done.