Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00420.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3093
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:2911 original size:105 final size:105

Alignment explanation


    Indices: 2722--2938  Score: 371
    Period size: 105  Copynumber: 2.1  Consensus size: 105

       2712 CGTCCTTCAA

                                                        *                    
       2722 TGAGTAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTGAGATGCCTCCTAAACCATTC
          1 TGAG-AAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTC

                                                     
       2787 CATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG
         65 CATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG

                                              *                  *   *       
       2828 TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTGAACTCCTTAAGATGCCTCTTAAGCCATTCC
          1 TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTCC

                         *                       *  
       2893 ATCAACTTCCTCTTGAAACATCAATGGAGGTTCATAGTTG
         66 ATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG

                  
       2933 TGAGAA
          1 TGAGAA

       2939 CTCTAATGAT


Statistics
Matches: 105,  Mismatches: 6, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 105  101  0.96
 106    4  0.04

ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Consensus pattern (105 bp):   
TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTCC
ATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG
Done.