Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01543.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26


Found at i:987 original size:35 final size:35

Alignment explanation


    Indices: 941--1013  Score: 146
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        931 TCGCTCCTAC

                                               
        941 CGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGG
          1 CGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGG

                                               
        976 CGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGG
          1 CGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGG

               
       1011 CGA
          1 CGA

       1014 CGTGGGCGGT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   38  1.00

ACGTcount: A:0.18, C:0.18, G:0.40, T:0.25


Consensus pattern (35 bp):   
CGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGG
Done.