Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01554.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3775
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36


Found at i:2170 original size:26 final size:26

Alignment explanation


    Indices: 2134--2193  Score: 111
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       2124 GCTAAGGTGG

                          *           
       2134 TGCATATTAGTCAGTCCATGGATCAA
          1 TGCATATTAGTCAGCCCATGGATCAA

                                      
       2160 TGCATATTAGTCAGCCCATGGATCAA
          1 TGCATATTAGTCAGCCCATGGATCAA

                    
       2186 TGCATATT
          1 TGCATATT

       2194 CGGTTTTCTT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   33  1.00

ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Consensus pattern (26 bp):   
TGCATATTAGTCAGCCCATGGATCAA
Done.