Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00420.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3480
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:3298 original size:105 final size:105

Alignment explanation


    Indices: 3109--3325  Score: 371
    Period size: 105  Copynumber: 2.1  Consensus size: 105

       3099 CGTCCTTCAA

                                                        *                    
       3109 TGAGTAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTGAGATGCCTCCTAAACCATTC
          1 TGAG-AAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTC

                                                     
       3174 CATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG
         65 CATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG

                                              *                  *   *       
       3215 TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTGAACTCCTTAAGATGCCTCTTAAGCCATTCC
          1 TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTCC

                         *                       *  
       3280 ATCAACTTCCTCTTGAAACATCAATGGAGGTTCATAGTTG
         66 ATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG

                  
       3320 TGAGAA
          1 TGAGAA

       3326 CTCTAATGAT


Statistics
Matches: 105,  Mismatches: 6, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 105  101  0.96
 106    4  0.04

ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Consensus pattern (105 bp):   
TGAGAAGGTCTTGAAGATGCTTGAATCTGATGTTAAACTCCTTAAGATGCCTCCTAAACCATTCC
ATCAACTTCCTCTAGAAACATCAATGGAGGTTCATAGCTG
Done.