Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01557.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 346

Length: 577
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.32


Found at i:178 original size:9 final size:9

Alignment explanation


    Indices: 128--199  Score: 54
    Period size: 9  Copynumber: 8.0  Consensus size: 9

        118 AAGGTCACGA

                  *  
        128 TCAATAGCG
          1 TCAATATCG

               *    *
        137 TCACTATCA
          1 TCAATATCG

                  *  
        146 TCAATAGCG
          1 TCAATATCG

               *  * *
        155 TCACTACCA
          1 TCAATATCG

                     
        164 TCAATATCG
          1 TCAATATCG

                     
        173 TCAATATCG
          1 TCAATATCG

               *    *
        182 TCACTATCA
          1 TCAATATCG

             *       
        191 TTAATATCG
          1 TCAATATCG

        200 ATATCATCAA


Statistics
Matches: 46,  Mismatches: 17, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
   9   46  1.00

ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31


Consensus pattern (9 bp):   
TCAATATCG

Found at i:189 original size:18 final size:18

Alignment explanation


    Indices: 127--180  Score: 81
    Period size: 18  Copynumber: 3.0  Consensus size: 18

        117 CAAGGTCACG

                              
        127 ATCAATAGCGTCACTATC
          1 ATCAATAGCGTCACTATC

                            * 
        145 ATCAATAGCGTCACTACC
          1 ATCAATAGCGTCACTATC

                   *     *    
        163 ATCAATATCGTCAATATC
          1 ATCAATAGCGTCACTATC

        181 GTCACTATCA


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.35, C:0.28, G:0.09, T:0.28


Consensus pattern (18 bp):   
ATCAATAGCGTCACTATC

Found at i:199 original size:27 final size:27

Alignment explanation


    Indices: 141--199  Score: 82
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        131 ATAGCGTCAC

                *                      
        141 TATCATCAATAGCGTCACTACCATCAA
          1 TATCGTCAATAGCGTCACTACCATCAA

                       *        *   *  
        168 TATCGTCAATATCGTCACTATCATTAA
          1 TATCGTCAATAGCGTCACTACCATCAA

                 
        195 TATCG
          1 TATCG

        200 ATATCATCAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.34, C:0.25, G:0.08, T:0.32


Consensus pattern (27 bp):   
TATCGTCAATAGCGTCACTACCATCAA
Done.