Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01572.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3126
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33


Found at i:613 original size:21 final size:21

Alignment explanation


    Indices: 574--613  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        564 TTTATTTAAA

                       *         
        574 AATATAAATGATATAGAATAT
          1 AATATAAATGAAATAGAATAT

                          *    
        595 AATATAAATGAAATGGAAT
          1 AATATAAATGAAATAGAAT

        614 TACTGATAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30


Consensus pattern (21 bp):   
AATATAAATGAAATAGAATAT

Found at i:757 original size:14 final size:14

Alignment explanation


    Indices: 738--766  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        728 TAGATAAATA

                          
        738 ATAATCTATATAAC
          1 ATAATCTATATAAC

                          
        752 ATAATCTATATAAC
          1 ATAATCTATATAAC

             
        766 A
          1 A

        767 AAGTAAAAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34


Consensus pattern (14 bp):   
ATAATCTATATAAC

Found at i:2478 original size:19 final size:19

Alignment explanation


    Indices: 2454--2493  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2444 TTTTTTTTTT

                    *       *  
       2454 ATTAGAATCGAAAAGTTTA
          1 ATTAGAATAGAAAAGTATA

                               
       2473 ATTAGAATAGAAAAGTATA
          1 ATTAGAATAGAAAAGTATA

              
       2492 AT
          1 AT

       2494 AAAAGTTTAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30


Consensus pattern (19 bp):   
ATTAGAATAGAAAAGTATA
Done.