Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01573.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 293

Length: 489
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33


Found at i:74 original size:14 final size:15

Alignment explanation


    Indices: 55--94  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

         45 GAAGATGGAT

                           
         55 AAATAAA-AAAAAAG
          1 AAATAAATAAAAAAG

                        *  
         69 AAATAAATAAAATAG
          1 AAATAAATAAAAAAG

                       
         84 AATATAAATAA
          1 AA-ATAAATAA

         95 GATAAAGATA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14    7  0.30
  15    8  0.35
  16    8  0.35

ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17


Consensus pattern (15 bp):   
AAATAAATAAAAAAG
Done.