Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01578.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1635
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29


Found at i:1228 original size:86 final size:86

Alignment explanation


    Indices: 1083--1252  Score: 313
    Period size: 86  Copynumber: 2.0  Consensus size: 86

       1073 TTATGAGAAG

                                                                 *           
       1083 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCGCCACCACCACC
          1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC

                                 
       1148 AGGTGCAAGTTAAACTATAAA
         66 AGGTGCAAGTTAAACTATAAA

                                 *                       *                   
       1169 AAGAAGCGTAAGCGACCACCAGCTCAACAGATCCCGACTCTACCATTGCCGCCACCACCACCACC
          1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC

                               
       1234 AGGTGCAAGTTAAACTATA
         66 AGGTGCAAGTTAAACTATA

       1253 TATATGCATC


Statistics
Matches: 81,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  86   81  1.00

ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14


Consensus pattern (86 bp):   
AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
AGGTGCAAGTTAAACTATAAA
Done.