Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01578.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3084
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35


Found at i:1309 original size:86 final size:86

Alignment explanation


    Indices: 1164--1333  Score: 313
    Period size: 86  Copynumber: 2.0  Consensus size: 86

       1154 TTATGAGAAG

                                                                 *           
       1164 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCGCCACCACCACC
          1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC

                                 
       1229 AGGTGCAAGTTAAACTATAAA
         66 AGGTGCAAGTTAAACTATAAA

                                 *                       *                   
       1250 AAGAAGCGTAAGCGACCACCAGCTCAACAGATCCCGACTCTACCATTGCCGCCACCACCACCACC
          1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC

                               
       1315 AGGTGCAAGTTAAACTATA
         66 AGGTGCAAGTTAAACTATA

       1334 TATATGCATC


Statistics
Matches: 81,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  86   81  1.00

ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14


Consensus pattern (86 bp):   
AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
AGGTGCAAGTTAAACTATAAA
Done.