Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01599.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4158
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28


Found at i:2020 original size:19 final size:19

Alignment explanation


    Indices: 1993--2034  Score: 59
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1983 TAGCAGCACC

                                
       1993 AAAAGAAAAGTAAAA-AAAT
          1 AAAAGAAAA-TAAAAGAAAT

                *              
       2012 AAAATAAAATAAAAGAAAT
          1 AAAAGAAAATAAAAGAAAT

                
       2031 AAAA
          1 AAAA

       2035 ATATCTGAAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  18    5  0.24
  19   16  0.76

ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12


Consensus pattern (19 bp):   
AAAAGAAAATAAAAGAAAT
Done.