Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01598.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3448
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:662 original size:19 final size:19

Alignment explanation


    Indices: 638--679  Score: 59
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        628 CTTCAGATAT

                                
        638 TTTTATTTCTTTTA-TTTTA
          1 TTTTATTT-TTTTACTTTTA

                              *
        657 TTTTATTTTTTTACTTTTC
          1 TTTTATTTTTTTACTTTTA

                
        676 TTTT
          1 TTTT

        680 GGTGCTGCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  18    5  0.24
  19   16  0.76

ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81


Consensus pattern (19 bp):   
TTTTATTTTTTTACTTTTA
Done.