Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01608.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38


Found at i:851 original size:50 final size:51

Alignment explanation


    Indices: 775--877  Score: 181
    Period size: 50  Copynumber: 2.0  Consensus size: 51

        765 CCTTAATTTT

                                                    *          
        775 TTTCTAACGTCTTTTTTCCTTTACCGGCTGTTAATTTTCTTTCTTATTCTG
          1 TTTCTAACGTCTTTTTTCCTTTACCGGCTGTTAATTTTCTCTCTTATTCTG

                   *                                           
        826 TTTCTAAGGTC-TTTTTCCTTTACCGGCTGTTAATTTTCTCTCTTATTCTG
          1 TTTCTAACGTCTTTTTTCCTTTACCGGCTGTTAATTTTCTCTCTTATTCTG

              
        876 TT
          1 TT

        878 CCAGCTTTAT


Statistics
Matches: 50,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  50   40  0.80
  51   10  0.20

ACGTcount: A:0.12, C:0.21, G:0.11, T:0.56


Consensus pattern (51 bp):   
TTTCTAACGTCTTTTTTCCTTTACCGGCTGTTAATTTTCTCTCTTATTCTG
Done.