Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01619.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4360
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35


Found at i:3472 original size:140 final size:140

Alignment explanation


    Indices: 3220--3499  Score: 506
    Period size: 140  Copynumber: 2.0  Consensus size: 140

       3210 GACTTTGGGT

                                   *      *                                  
       3220 GAGAACAAAGCTCGACATGCAAGCTCGTCGTCAATGGGTTAAGAGCAGGATGGAAGACAGAGGAG
          1 GAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGAG

                                                                            *
       3285 CCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACACT
         66 CCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACACC

                      
       3350 ACTTTTTCTG
        131 ACTTTTTCTG

                   *                 *                                       
       3360 GAGAACACAGCTCGACATGCAAGATTGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGAG
          1 GAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGAG

                                                                    *        
       3425 CCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTTCAAACACC
         66 CCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACACC

                      
       3490 ACTTTTTCTG
        131 ACTTTTTCTG

       3500 AAACTCACCA


Statistics
Matches: 134,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 140  134  1.00

ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23


Consensus pattern (140 bp):   
GAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGAG
CCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACACC
ACTTTTTCTG
Done.