Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01619.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4128
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Found at i:3239 original size:140 final size:140
Alignment explanation
Indices: 2987--3267 Score: 508
Period size: 140 Copynumber: 2.0 Consensus size: 140
2977 CTAATATGTA
* *
2987 GGAGAACAAAGCTCGACATGCAAGCTCGTCGTCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
1 GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
3052 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
66 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
*
3117 TACTTTTTCT
131 CACTTTTTCT
* *
3127 GGAGAACACAGCTCGACATGCAAGATTGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
1 GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
*
3192 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTTCAAACAC
66 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
3257 CACTTTTTCT
131 CACTTTTTCT
3267 G
1 G
3268 AAACTCACCA
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 135 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (140 bp):
GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
CACTTTTTCT
Done.