Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01619.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2503
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Found at i:1609 original size:140 final size:140
Alignment explanation
Indices: 1357--1637 Score: 508
Period size: 140 Copynumber: 2.0 Consensus size: 140
1347 GGAGACTTTG
* *
1357 GGAGAACAAAGCTCGACATGCAAGCTCGTCGTCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
1 GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
1422 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
66 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
*
1487 TACTTTTTCT
131 CACTTTTTCT
* *
1497 GGAGAACACAGCTCGACATGCAAGATTGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
1 GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
*
1562 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTTCAAACAC
66 GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
1627 CACTTTTTCT
131 CACTTTTTCT
1637 G
1 G
1638 AAACTCACCA
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 135 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (140 bp):
GGAGAACAAAGCTCGACATGCAAGATCGTCGCCAATGGGTTAAGAGCAGGATGGAAGACAGAGGA
GCCAAACCTTGTGAATTTTCTCAAACAGCTCCACCTCACAAACCCTCTGATTCAGTTGCAAACAC
CACTTTTTCT
Done.