Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01620.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3219
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34


Found at i:1672 original size:78 final size:78

Alignment explanation


    Indices: 1543--1693  Score: 239
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1533 CCCATATTCT

                                     *        *                         *    
       1543 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1608 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                       *                *             *                *     
       1621 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                    
       1686 ACCATGGA
         66 ACCATGGA

       1694 CTTTGTGTAC


Statistics
Matches: 66,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  78   66  1.00

ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26


Consensus pattern (78 bp):   
ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.