Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01621.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41


Found at i:598 original size:53 final size:51

Alignment explanation


    Indices: 536--641  Score: 185
    Period size: 53  Copynumber: 2.0  Consensus size: 51

        526 CCTTAATTTT

                       *                                         
        536 TTTCTAACGTCTTTTTTCCTTTACCGGCTGTTAATTTTTTCTTTCTTATTCTG
          1 TTTCTAACGTCCTTTTTCCTTTACCGGCTGTTAA--TTTTCTTTCTTATTCTG

                                                               
        589 TTTCTAACGTCCTTTTTCCTTTACCGGCTGTTAATTTTCTTTCTTATTCTG
          1 TTTCTAACGTCCTTTTTCCTTTACCGGCTGTTAATTTTCTTTCTTATTCTG

              
        640 TT
          1 TT

        642 CCGGCTTTAT


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  51   19  0.37
  53   33  0.63

ACGTcount: A:0.11, C:0.22, G:0.09, T:0.58


Consensus pattern (51 bp):   
TTTCTAACGTCCTTTTTCCTTTACCGGCTGTTAATTTTCTTTCTTATTCTG
Done.