Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01640.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4989
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32


Found at i:321 original size:23 final size:23

Alignment explanation


    Indices: 295--340  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        285 GGGATATTAG

                                   
        295 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

                                   
        318 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

        341 TCAAAATATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (23 bp):   
ATATTGACTAGTTATATACGAAC

Found at i:2253 original size:19 final size:18

Alignment explanation


    Indices: 2209--2260  Score: 52
    Period size: 20  Copynumber: 2.7  Consensus size: 18

       2199 GTAACTTTTT

                               
       2209 TATTTATTATTTTTTATTA
          1 TATTT-TTATTTTTTATTA

                                 
       2228 TACTTTTTAGTTTTTTGA-TA
          1 TA-TTTTTA-TTTTTT-ATTA

                         
       2248 TATTTTCTATTTT
          1 TATTTT-TATTTT

       2261 GGTCAGAAGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 8
        0.78            0.00        0.22

Matches are distributed among these distances:
  19   13  0.45
  20   15  0.52
  21    1  0.03

ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71


Consensus pattern (18 bp):   
TATTTTTATTTTTTATTA
Done.