Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01656.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1893
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:1227 original size:14 final size:14

Alignment explanation


    Indices: 1205--1238  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1195 AATAGAAAAC

                *         
       1205 TTTTCATCACTTTT
          1 TTTTTATCACTTTT

                          
       1219 TTTTTATCACTTTT
          1 TTTTTATCACTTTT

             *    
       1233 TCTTTA
          1 TTTTTA

       1239 GCCTCCGGGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68


Consensus pattern (14 bp):   
TTTTTATCACTTTT

Found at i:1800 original size:16 final size:16

Alignment explanation


    Indices: 1779--1829  Score: 93
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1769 AAGAAAGAGC

                            
       1779 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

                            
       1795 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               *            
       1811 AAACACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               
       1827 AAA
          1 AAA

       1830 ATACTAGAAA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   34  1.00

ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22


Consensus pattern (16 bp):   
AAATACGCTAGTAAAT
Done.