Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01662.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 364

Length: 608
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:254 original size:24 final size:24

Alignment explanation


    Indices: 227--272  Score: 58
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        217 TGCTACCATT

                        *            
        227 GCCATAAC-TTGTATAAGCAACAAA
          1 GCCATAACATTGGA-AAGCAACAAA

                 *                
        251 GCCATGACATTGGAAAGCAACA
          1 GCCATAACATTGGAAAGCAACA

        273 TGACAGTTCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  24   15  0.79
  25    4  0.21

ACGTcount: A:0.43, C:0.22, G:0.17, T:0.17


Consensus pattern (24 bp):   
GCCATAACATTGGAAAGCAACAAA
Done.