Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01673.P2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49271
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Found at i:3311 original size:24 final size:24
Alignment explanation
Indices: 3272--3325 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
3262 CCGGTTAGGT
* * *
3272 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
3296 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
3320 TCCCGG
1 TCCCGG
3326 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:3450 original size:58 final size:59
Alignment explanation
Indices: 3359--3479 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
3349 CCCTCCCCAA
* *
3359 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
3418 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
3476 TCCC
1 TCCC
3480 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:3900 original size:24 final size:24
Alignment explanation
Indices: 3873--3950 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
3863 CCGGTTAGGT
* *
3873 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
3897 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
3921 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
3945 TCCCGG
1 TCCCGG
3951 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:4281 original size:42 final size:42
Alignment explanation
Indices: 4137--4835 Score: 815
Period size: 42 Copynumber: 16.5 Consensus size: 42
4127 CACATTGCTG
* * * * * *
4137 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
4180 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
4224 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
4265 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
4308 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
4350 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
4392 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
4435 CCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
4477 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
4518 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
4559 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
4602 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
4644 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
4687 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
4730 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
4772 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
4815 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
4836 AGCAGCAGGG
Statistics
Matches: 577, Mismatches: 60, Indels: 38
0.85 0.09 0.06
Matches are distributed among these distances:
41 63 0.11
42 257 0.45
43 254 0.44
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:4856 original size:85 final size:84
Alignment explanation
Indices: 4162--4839 Score: 820
Period size: 85 Copynumber: 8.0 Consensus size: 84
4152 GCCTTGGACG
* * *
4162 CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-CTTG
4227 G-TCGTGCGGGAGCCTCG-GCCA
64 GAT-GTGCGGGAGCCTCGAG-CA
* * ** * *
4248 CCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTG
* *
4312 G-TCGTGCGAGAGCCTCGGGCA
64 GAT-GTGCGGGAGCCTCGAGCA
* *
4333 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG
*
4397 ATGTGCGGGAGCCTCGGGCA
65 ATGTGCGGGAGCCTCGAGCA
*
4417 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTG
* *
4481 G-TCGTGCGAGAGCCTCG-GGA
64 GAT-GTGCGGGAGCCTCGAGCA
*
4501 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCTTGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGA
*
4565 TGTGCGGGAGCCTCGGGCA
66 TGTGCGGGAGCCTCGAGCA
* * * *
4584 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG
*
4649 ATGTGCGGGAGCCTCGAACA
65 ATGTGCGGGAGCCTCGAGCA
* *
4669 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAG-GCCTTG
4734 GATGTGCGGGAGCCTCGAGCA
64 GATGTGCGGGAGCCTCGAGCA
* * * ** * *
4755 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTT
*
4818 GGATGTGCGGGTGCCTCGAGCA
63 GGATGTGCGGGAGCCTCGAGCA
4840 GCAGGGGCAC
Statistics
Matches: 526, Mismatches: 50, Indels: 33
0.86 0.08 0.05
Matches are distributed among these distances:
82 19 0.04
83 46 0.09
84 116 0.22
85 299 0.57
86 45 0.09
87 1 0.00
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (84 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGA
TGTGCGGGAGCCTCGAGCA
Found at i:12288 original size:179 final size:177
Alignment explanation
Indices: 11963--12317 Score: 507
Period size: 179 Copynumber: 2.0 Consensus size: 177
11953 GTAAGGAGTT
* * *
11963 AGTTAAACACTTGGCCGTGCCGCCTCCCGGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
* * * * * *
12028 TGCGAGCTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTCTGCCGTGCCGCCGTGCCATG
66 TGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCAT-
*
12093 CCATGCCATACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
130 -CATGCCATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
*
12142 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGCACAGCGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGA
*
12207 GTGCGAGC-CCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCATCATGCCAT
65 GTGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCAT
** *
12271 -ATTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
130 CATGCCA-T--ACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
12318 TCAATTAAAA
Statistics
Matches: 157, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
176 4 0.03
177 1 0.01
179 110 0.70
180 42 0.27
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (177 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
TGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCATC
ATGCCATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:12715 original size:24 final size:24
Alignment explanation
Indices: 12676--12729 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
12666 CCGGTTAGGT
* * *
12676 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
12700 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
12724 TCCCGG
1 TCCCGG
12730 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:12854 original size:58 final size:59
Alignment explanation
Indices: 12763--12883 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
12753 CCCTCCCCAA
* *
12763 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
12822 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
12880 TCCC
1 TCCC
12884 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:13334 original size:24 final size:24
Alignment explanation
Indices: 13280--13354 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
13270 CCGGTTAGGT
*
13280 TCCCGGCGGTGCTCCGGCGA-TC-
1 TCCCGGCGGTGCTCCGGCGAGCCA
13302 -CCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
13325 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
13349 TCCCGG
1 TCCCGG
13355 AATATCGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
21 19 0.39
22 1 0.02
24 29 0.59
ACGTcount: A:0.07, C:0.43, G:0.37, T:0.13
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:13839 original size:43 final size:43
Alignment explanation
Indices: 13541--14226 Score: 852
Period size: 42 Copynumber: 16.5 Consensus size: 43
13531 CACATTGCTG
* * * * * *
13541 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13584 CTT-GTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
13625 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
13667 CCTGGTCGT---GGAG-CTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
13706 CTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13748 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGG--
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13786 C-TGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13827 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13869 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13909 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
13950 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * **
13993 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** *
14035 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
14078 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * * **
14121 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
14163 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
14206 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
14227 AGCAGCAGGG
Statistics
Matches: 579, Mismatches: 41, Indels: 46
0.87 0.06 0.07
Matches are distributed among these distances:
36 4 0.01
37 12 0.02
38 13 0.02
39 41 0.07
40 43 0.07
41 105 0.18
42 193 0.33
43 167 0.29
44 1 0.00
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:14052 original size:85 final size:85
Alignment explanation
Indices: 13541--14226 Score: 844
Period size: 85 Copynumber: 8.2 Consensus size: 85
13531 CACATTGCTG
* * * * * *
13541 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTT-GTCGTGCGGGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
13604 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
* *
13625 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGT---GGAG-CTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
13685 CCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
* *
13706 CTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCGTGC-GGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
13768 GCACCATCGGCACCTAGG--
66 GCACCATCGGCACCTAGGCC
13786 C-TGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
13848 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
13869 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
13930 GCACCATCGGCACCTAGGCC
66 GCACCATCGGCACCTAGGCC
*
13950 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
14015 GCACCATCGGCACTTTGGTG
66 GCACCATCGGCACCTAGGCC
** *
14035 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
14099 GGCACCATCGGCACCTTGGTGC
65 GGCACCATCGGCACCTAGG-CC
* * * * **
14121 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* *
14183 GGACACCATCGGCAACCTAGGAC
64 GGGCACCATCGGC-ACCTAGGCC
* *
14206 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
14227 AGCAGCAGGG
Statistics
Matches: 544, Mismatches: 36, Indels: 43
0.87 0.06 0.07
Matches are distributed among these distances:
78 24 0.04
79 32 0.06
80 16 0.03
81 70 0.13
82 77 0.14
83 85 0.16
84 49 0.09
85 153 0.28
86 38 0.07
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGCC
Found at i:14256 original size:43 final size:43
Alignment explanation
Indices: 13713--14262 Score: 338
Period size: 43 Copynumber: 13.2 Consensus size: 43
13703 GCCCTTGGTC
* **
13713 GTGCGAGAGCCTCG-GCCACCATCGGCA-CCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCGGCACCCT-GGTGGCTTGGAT
*
13754 CGTGC-GGAGCCTCG-GCACCATCGGCA-CCT--AGGC-TGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * **
13791 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * **
13833 CGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
**
13875 CGTGC-GGAGCCTCG-GCACCATCGGCA-CCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
**
13915 CGTGCGGGAGCCTCG-GCACCATCGGCA-CCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * ** *
13956 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* **
13999 CGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGT-GCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * **
14042 GTGCGGGAGCCTCGAACACCATCGGCAACCTCGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * *
14084 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * *
14128 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * *
14170 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAG-GACGTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATCGGCACCCTGGTGGC-TTGGAT
* * ** *
14213 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
14256 GTGCGGG
1 GTGCGGG
14263 CTAAAGAAAA
Statistics
Matches: 444, Mismatches: 40, Indels: 47
0.84 0.08 0.09
Matches are distributed among these distances:
36 4 0.01
37 13 0.03
38 13 0.03
39 3 0.01
40 33 0.07
41 73 0.16
42 140 0.32
43 161 0.36
44 4 0.01
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
Found at i:22111 original size:24 final size:24
Alignment explanation
Indices: 22072--22125 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
22062 CCGGTTAGGT
* * *
22072 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
22096 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
22120 TCCCGG
1 TCCCGG
22126 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:22250 original size:58 final size:59
Alignment explanation
Indices: 22159--22279 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
22149 CCCTCCCCAA
* *
22159 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
22218 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
22276 TCCC
1 TCCC
22280 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:22703 original size:24 final size:24
Alignment explanation
Indices: 22676--22753 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
22666 CCGGTTAGGT
* *
22676 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
22700 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
22724 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
22748 TCCCGG
1 TCCCGG
22754 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:23074 original size:85 final size:85
Alignment explanation
Indices: 22940--23639 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
22930 CACATTGCTG
* * * * * *
22940 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
23005 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
23027 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
23090 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
23111 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
23175 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
23195 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
23259 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
23280 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
23343 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
23363 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
23428 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
23448 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
23513 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
23534 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
23598 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
23620 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
23640 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:23084 original size:42 final size:42
Alignment explanation
Indices: 22940--23639 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
22930 CACATTGCTG
* * * * * *
22940 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
22983 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
23027 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
23068 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
23111 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
23153 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
23195 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
23238 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
23280 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
23321 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
23363 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
23406 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
23448 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
23491 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
23534 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
23576 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
23619 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
23640 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:31524 original size:24 final size:24
Alignment explanation
Indices: 31485--31538 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
31475 CCGGTTAGGT
* * *
31485 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
31509 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
31533 TCCCGG
1 TCCCGG
31539 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:31663 original size:58 final size:59
Alignment explanation
Indices: 31572--31692 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
31562 CCCTCCCCAA
* *
31572 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
31631 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
31689 TCCC
1 TCCC
31693 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:32116 original size:24 final size:24
Alignment explanation
Indices: 32089--32166 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
32079 CCGGTTAGGT
* *
32089 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
32113 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
32137 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
32161 TCCCGG
1 TCCCGG
32167 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:32487 original size:85 final size:85
Alignment explanation
Indices: 32353--33052 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
32343 CACATTGCTG
* * * * * *
32353 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
32418 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
32440 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
32503 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
32524 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
32588 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
32608 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
32672 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
32693 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
32756 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
32776 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
32841 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
32861 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
32926 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
32947 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
33011 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
33033 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
33053 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:32497 original size:42 final size:42
Alignment explanation
Indices: 32353--33052 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
32343 CACATTGCTG
* * * * * *
32353 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
32396 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
32440 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
32481 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
32524 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
32566 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
32608 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
32651 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
32693 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
32734 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
32776 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
32819 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
32861 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
32904 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
32947 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
32989 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
33032 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
33053 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:40937 original size:24 final size:24
Alignment explanation
Indices: 40898--40951 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
40888 CCGGTTAGGT
* * *
40898 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
40922 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
40946 TCCCGG
1 TCCCGG
40952 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:41076 original size:58 final size:59
Alignment explanation
Indices: 40985--41105 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
40975 CCCTCCCCAA
* *
40985 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
41044 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
41102 TCCC
1 TCCC
41106 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:41529 original size:24 final size:24
Alignment explanation
Indices: 41502--41579 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
41492 CCGGTTAGGT
* *
41502 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
41526 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
41550 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
41574 TCCCGG
1 TCCCGG
41580 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:41900 original size:85 final size:85
Alignment explanation
Indices: 41766--42465 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
41756 CACATTGCTG
* * * * * *
41766 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
41831 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
41853 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
41916 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
41937 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
42001 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
42021 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
42085 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
42106 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
42169 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
42189 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
42254 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
42274 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
42339 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
42360 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
42424 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
42446 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
42466 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:41910 original size:42 final size:42
Alignment explanation
Indices: 41766--42465 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
41756 CACATTGCTG
* * * * * *
41766 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
41809 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
41853 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
41894 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
41937 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
41979 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
42021 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
42064 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
42106 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
42147 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
42189 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
42232 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
42274 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
42317 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
42360 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
42402 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
42445 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
42466 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Done.