Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01679.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8964
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27


Found at i:5307 original size:17 final size:17

Alignment explanation


    Indices: 5287--5322  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       5277 ATATCCTTAG

                             
       5287 CTTTCCTGTATCTCTTT
          1 CTTTCCTGTATCTCTTT

                 *   *       
       5304 CTTTCTTGTCTCTCTTT
          1 CTTTCCTGTATCTCTTT

              
       5321 CT
          1 CT

       5323 CTATCTTCCC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.03, C:0.31, G:0.06, T:0.61


Consensus pattern (17 bp):   
CTTTCCTGTATCTCTTT
Done.