Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01698.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33


Found at i:1128 original size:16 final size:16

Alignment explanation


    Indices: 1107--1139  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1097 TCTTATTCCT

                       *    
       1107 TTGCTACTATAGAATA
          1 TTGCTACTATAAAATA

                            
       1123 TTGCTACTATAAAATA
          1 TTGCTACTATAAAATA

             
       1139 T
          1 T

       1140 AGAATACCGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39


Consensus pattern (16 bp):   
TTGCTACTATAAAATA
Done.