Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01699.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3206
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33


Found at i:1649 original size:29 final size:29

Alignment explanation


    Indices: 1607--1664  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1597 TAAATAAATT

                                         
       1607 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

                                         
       1636 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

       1665 TCGGTTAATA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (29 bp):   
CTTTTTTGGAACTACATAGATCTATGGAA

Found at i:2842 original size:14 final size:14

Alignment explanation


    Indices: 2823--2850  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       2813 TATTTACCTT

                          
       2823 CGATCAATATTATC
          1 CGATCAATATTATC

                          
       2837 CGATCAATATTATC
          1 CGATCAATATTATC

       2851 TTTATCTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36


Consensus pattern (14 bp):   
CGATCAATATTATC
Done.