Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01700.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6032
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:4475 original size:29 final size:29

Alignment explanation


    Indices: 4433--4490  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       4423 TAAATAAATT

                                         
       4433 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

                                         
       4462 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

       4491 TCGGTTAATA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (29 bp):   
CTTTTTTGGAACTACATAGATCTATGGAA

Found at i:5668 original size:14 final size:14

Alignment explanation


    Indices: 5649--5676  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       5639 TATTTACCTT

                          
       5649 CGATCAATATTATC
          1 CGATCAATATTATC

                          
       5663 CGATCAATATTATC
          1 CGATCAATATTATC

       5677 TTTATCTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36


Consensus pattern (14 bp):   
CGATCAATATTATC
Done.