Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01701.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1828
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1304 original size:14 final size:14

Alignment explanation


    Indices: 1282--1315  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1272 AATAGAAAAC

                *         
       1282 TTTTCATCACTTTT
          1 TTTTTATCACTTTT

                          
       1296 TTTTTATCACTTTT
          1 TTTTTATCACTTTT

             *    
       1310 TCTTTA
          1 TTTTTA

       1316 GCCTCCGGGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68


Consensus pattern (14 bp):   
TTTTTATCACTTTT
Done.