Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01707.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4695
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:3330 original size:210 final size:210

Alignment explanation


    Indices: 2962--3367  Score: 562
    Period size: 210  Copynumber: 1.9  Consensus size: 210

       2952 AGGCTTAAGC

                       **  *                             *                   
       2962 TTTTGAATTTAGGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAGAATTGGAATGGAATCCCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGGAATCCCTT

                *                            *                    * *        
       3027 GAAAGGTTAACTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
         66 GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGA

               **  ***   *   *   *         *                                 
       3092 ATGTTTGTTGGAGGTTTGTTTTGATGGGACATACATTAAAGAGCTACCT-TCTTCAATTGGAAAT
        131 ATGCCTGCAAGAGCTTTATTTAGATGGGACAGACATTAAAGAGCTACCTAT-TTCAATTGGAAAT

                            
       3156 CTCAGAAGACTTGAAG
        195 CTCAGAAGACTTGAAG

                               *                                         *   
       3172 TTTTGAATTTAAAAGACTGTAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGGAATCCCTT

                      *            *  *  *        *                          
       3237 GAAAAGTTAATTCTTTCAGGTTGTTCCAATCTTAAAAGGTTTCCAGAGATTGATAGCAAAATGGA
         66 GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGA

                                          * *                                
       3302 ATGCCTGCAAGAGCTTTATTTAGATGGGACGGGCATTAAAGAGCTACCTATTTCAATTGGAAATC
        131 ATGCCTGCAAGAGCTTTATTTAGATGGGACAGACATTAAAGAGCTACCTATTTCAATTGGAAATC

             
       3367 T
        196 T

       3368 GAGCAGTCTT


Statistics
Matches: 169,  Mismatches: 26, Indels: 2
        0.86            0.13        0.01

Matches are distributed among these distances:
 210  168  0.99
 211    1  0.01

ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Consensus pattern (210 bp):   
TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGGAATCCCTT
GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGA
ATGCCTGCAAGAGCTTTATTTAGATGGGACAGACATTAAAGAGCTACCTATTTCAATTGGAAATC
TCAGAAGACTTGAAG
Done.