Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01713.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5173
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33


Found at i:515 original size:72 final size:72

Alignment explanation


    Indices: 437--575  Score: 278
    Period size: 72  Copynumber: 1.9  Consensus size: 72

        427 AGAGGGAGGA

                                                                             
        437 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

                   
        502 GTGTTGT
         66 GTGTTGT

                                                                             
        509 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

              
        574 GT
         66 GT

        576 ACATTTTTTT


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  72   67  1.00

ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42


Consensus pattern (72 bp):   
ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
GTGTTGT

Found at i:1221 original size:78 final size:78

Alignment explanation


    Indices: 1092--1243  Score: 232
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1082 CTCATATTCT

                       *             *        *                         *    
       1092 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1157 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                                        *  *          *                *     
       1170 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                     
       1235 ACCATGGAG
         66 ACCATGGAG

       1244 GATTCTCAGA


Statistics
Matches: 66,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  78   66  1.00

ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.