Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01714.C57

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3606
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:504 original size:75 final size:75

Alignment explanation


    Indices: 422--561  Score: 280
    Period size: 75  Copynumber: 1.9  Consensus size: 75

        412 AGAGGGAGGA

                                                                             
        422 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

                      
        487 AAGGTGTTGT
         66 AAGGTGTTGT

                                                                             
        497 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

        562 GTACATTTTT


Statistics
Matches: 65,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  75   65  1.00

ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41


Consensus pattern (75 bp):   
ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
AAGGTGTTGT

Found at i:1292 original size:78 final size:78

Alignment explanation


    Indices: 1163--1314  Score: 232
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1153 CTCATATTCT

                       *             *        *                         *    
       1163 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1228 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                                        *  *          *                *     
       1241 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                     
       1306 ACCATGGAG
         66 ACCATGGAG

       1315 GATTCTCAGA


Statistics
Matches: 66,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  78   66  1.00

ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.