Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01714.F19
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4002
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Found at i:926 original size:75 final size:75
Alignment explanation
Indices: 844--983 Score: 280
Period size: 75 Copynumber: 1.9 Consensus size: 75
834 AGAGGGAGGA
844 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
909 AAGGTGTTGT
66 AAGGTGTTGT
919 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
984 GTACATTTTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (75 bp):
ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
AAGGTGTTGT
Found at i:1631 original size:78 final size:78
Alignment explanation
Indices: 1502--1653 Score: 232
Period size: 78 Copynumber: 1.9 Consensus size: 78
1492 CTCATATTCT
* * * *
1502 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
1567 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * * *
1580 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
1645 ACCATGGAG
66 ACCATGGAG
1654 GATTCTCAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (78 bp):
ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.