Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01717.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 436

Length: 727
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.18


Found at i:410 original size:77 final size:77

Alignment explanation


    Indices: 283--433  Score: 302
    Period size: 77  Copynumber: 2.0  Consensus size: 77

        273 AAGGGAAGTC

                                                                             
        283 GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGT
          1 GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGT

                        
        348 CCCGAACCCTCA
         66 CCCGAACCCTCA

                                                                             
        360 GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGT
          1 GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGT

                     
        425 CCCGAACCC
         66 CCCGAACCC

        434 GTCGGCTGCC


Statistics
Matches: 74,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  77   74  1.00

ACGTcount: A:0.23, C:0.27, G:0.34, T:0.15


Consensus pattern (77 bp):   
GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGT
CCCGAACCCTCA
Done.