Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01728.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 296
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:133 original size:18 final size:18

Alignment explanation


    Indices: 100--193  Score: 131
    Period size: 18  Copynumber: 5.4  Consensus size: 18

         90 AAGGTTTTCT

                              
        100 TATTGATGATA-T--CGA
          1 TATTGATGATAGTGACGA

                              
        115 TATTGATGATAGTGACGA
          1 TATTGATGATAGTGACGA

                    *         
        133 TATTGATGCTAGTGACGA
          1 TATTGATGATAGTGACGA

                    *        *
        151 TATTGATGCTAGTGACGC
          1 TATTGATGATAGTGACGA

                             *
        169 TATTGATGATAGTGACGC
          1 TATTGATGATAGTGACGA

                   
        187 TATTGAT
          1 TATTGAT

        194 CGTGACCTTG


Statistics
Matches: 73,  Mismatches: 3, Indels: 3
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   11  0.15
  16    1  0.01
  18   61  0.84

ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36


Consensus pattern (18 bp):   
TATTGATGATAGTGACGA

Done.