Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01729.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6254
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27


Found at i:1326 original size:14 final size:14

Alignment explanation


    Indices: 1307--1335  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1297 TACAATATAT

                          
       1307 ATAAGAATTATACG
          1 ATAAGAATTATACG

                          
       1321 ATAAGAATTATACG
          1 ATAAGAATTATACG

             
       1335 A
          1 A

       1336 ATCCATCTGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28


Consensus pattern (14 bp):   
ATAAGAATTATACG

Found at i:4125 original size:13 final size:15

Alignment explanation


    Indices: 4100--4139  Score: 66
    Period size: 13  Copynumber: 2.8  Consensus size: 15

       4090 TATTTTATTA

                           
       4100 AATAAATATTAAATT
          1 AATAAATATTAAATT

                           
       4115 AA-AAA-ATTAAATT
          1 AATAAATATTAAATT

                        
       4128 AATAAATATTAA
          1 AATAAATATTAA

       4140 TAAATTAAGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  13   10  0.43
  14    6  0.26
  15    7  0.30

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (15 bp):   
AATAAATATTAAATT
Done.