Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01737.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 402

Length: 671
ACGTcount: A:0.18, C:0.27, G:0.38, T:0.17


Found at i:596 original size:273 final size:273

Alignment explanation


    Indices: 109--654  Score: 1092
    Period size: 273  Copynumber: 2.0  Consensus size: 273

         99 CGAGGGAAAG

                                                                             
        109 ATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGG
          1 ATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGG

                                                                             
        174 GCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGATCGGCTCGGGGCAT
         66 GCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGATCGGCTCGGGGCAT

                                                                             
        239 GGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCTGTGGAGACGTCGTC
        131 GGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCTGTGGAGACGTCGTC

                                                                             
        304 GCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCTGCGTGCTCCGGGCGT
        196 GCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCTGCGTGCTCCGGGCGT

                         
        369 CGGCCTGCGGGCT
        261 CGGCCTGCGGGCT

                                                                             
        382 ATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGG
          1 ATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGG

                                                                             
        447 GCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGATCGGCTCGGGGCAT
         66 GCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGATCGGCTCGGGGCAT

                                                                             
        512 GGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCTGTGGAGACGTCGTC
        131 GGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCTGTGGAGACGTCGTC

                                                                             
        577 GCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCTGCGTGCTCCGGGCGT
        196 GCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCTGCGTGCTCCGGGCGT

                         
        642 CGGCCTGCGGGCT
        261 CGGCCTGCGGGCT

        655 CCCCATTCGG


Statistics
Matches: 273,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 273  273  1.00

ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16


Consensus pattern (273 bp):   
ATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGG
GCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGATCGGCTCGGGGCAT
GGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCTGTGGAGACGTCGTC
GCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCTGCGTGCTCCGGGCGT
CGGCCTGCGGGCT
Done.