Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01737.N3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 388
Length: 647
ACGTcount: A:0.16, C:0.29, G:0.38, T:0.17
Found at i:590 original size:249 final size:249
Alignment explanation
Indices: 152--647 Score: 992
Period size: 249 Copynumber: 2.0 Consensus size: 249
142 GCTTGAAATT
152 GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGG
1 GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGG
217 TCCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTG
66 TCCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTG
282 ATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTC
131 ATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTC
347 GGCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCTTG
196 GGCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCTTG
401 GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGG
1 GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGG
466 TCCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTG
66 TCCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTG
531 ATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTC
131 ATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTC
596 GGCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
196 GGCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
Statistics
Matches: 247, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
249 247 1.00
ACGTcount: A:0.10, C:0.33, G:0.41, T:0.16
Consensus pattern (249 bp):
GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGG
TCCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTG
ATACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTC
GGCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCTTG
Done.