Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01737.N4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 386
Length: 644
ACGTcount: A:0.16, C:0.30, G:0.38, T:0.17
Found at i:587 original size:246 final size:246
Alignment explanation
Indices: 153--644 Score: 984
Period size: 246 Copynumber: 2.0 Consensus size: 246
143 CTTGAAATTG
153 TCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGT
1 TCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGT
218 CCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGA
66 CCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGA
283 TACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCG
131 TACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCG
348 GCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
196 GCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
399 TCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGT
1 TCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGT
464 CCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGA
66 CCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGA
529 TACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCG
131 TACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCG
594 GCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
196 GCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
Statistics
Matches: 246, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 246 1.00
ACGTcount: A:0.11, C:0.33, G:0.40, T:0.16
Consensus pattern (246 bp):
TCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGT
CCGCCGATCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGA
TACGCCTGTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCG
GCACCTGCGTGCTCCGGGCGTCGGCCTGCGGGCTCCCCATTCGGCCCGTCT
Done.