Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g01737.N5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 355
Length: 592
ACGTcount: A:0.17, C:0.29, G:0.38, T:0.16
Found at i:489 original size:194 final size:194
Alignment explanation
Indices: 160--548 Score: 778
Period size: 194 Copynumber: 2.0 Consensus size: 194
150 TTGTCGGGAG
160 GGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGA
1 GGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGA
225 TCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCT
66 TCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCT
290 GTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCT
131 GTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCT
354 GGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGA
1 GGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGA
419 TCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCT
66 TCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCT
484 GTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCT
131 GTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCT
548 G
1 G
549 CGTGCTCCGG
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
194 195 1.00
ACGTcount: A:0.12, C:0.32, G:0.41, T:0.15
Consensus pattern (194 bp):
GGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCGAGAGCCGGTCCGCCGA
TCGGCTCGGGGCATGGACCGACGCGGGTCGTGGCGGCGGCCCAAGCCCGGGCCTTTGATACGCCT
GTGGAGACGTCGTCGCCTCGATCGTGGGATCCAGCACGCGCCGTCTCGGCGTGCTTCGGCACCT
Done.