Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01762.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2393
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2238 original size:30 final size:31

Alignment explanation


    Indices: 2190--2254  Score: 123
    Period size: 30  Copynumber: 2.1  Consensus size: 31

       2180 CTTTTCCAAC

                                           
       2190 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                                           
       2221 TTTCATCAGTA-AGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                
       2251 TTTC
          1 TTTC

       2255 TTTCTTTCTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  30   23  0.68
  31   11  0.32

ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26


Consensus pattern (31 bp):   
TTTCATCAGTAGAGGAGAGCACCTATACAAG
Done.