Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01763.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3285
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33


Found at i:497 original size:31 final size:32

Alignment explanation


    Indices: 459--529  Score: 83
    Period size: 31  Copynumber: 2.2  Consensus size: 32

        449 CATTCCAGGG

                          *           *     *
        459 ATATCCCGG-TTCGTTGTTATCCCATGTT-GGT
          1 ATATCCCGGCTTCGGT-TTATCCCATATTAGGA

                        *                   
        490 ATATCCCGGCTTGGGTTTATCCCATATTAGGA
          1 ATATCCCGGCTTCGGTTTATCCCATATTAGGA

                    
        522 ATATCCCG
          1 ATATCCCG

        530 ATTCCCCACT


Statistics
Matches: 34,  Mismatches: 4, Indels: 3
        0.83            0.10        0.07

Matches are distributed among these distances:
  31   20  0.59
  32   14  0.41

ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37


Consensus pattern (32 bp):   
ATATCCCGGCTTCGGTTTATCCCATATTAGGA

Found at i:3130 original size:30 final size:31

Alignment explanation


    Indices: 3082--3146  Score: 123
    Period size: 30  Copynumber: 2.1  Consensus size: 31

       3072 CTTTTCCAAC

                                           
       3082 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                                           
       3113 TTTCATCAGTA-AGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                
       3143 TTTC
          1 TTTC

       3147 TTTCTTTCTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  30   23  0.68
  31   11  0.32

ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26


Consensus pattern (31 bp):   
TTTCATCAGTAGAGGAGAGCACCTATACAAG
Done.