Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01770.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 677
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37


Found at i:162 original size:42 final size:43

Alignment explanation


    Indices: 96--210  Score: 135
    Period size: 42  Copynumber: 2.7  Consensus size: 43

         86 CGTTCTCTTT

                       * *  *  *                *      
         96 TCTATTCCAGGTAAATACCGCTCATATCCCAC-CTTGGAATAA
          1 TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA

                                     *                 
        138 TCTATTCCAGGGATATCCCTCTCATTTCCC-CTCTTAGAATAA
          1 TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA

              *     *             *        
        180 TCAATTCCGGGGATATCCCTCTGATATCCCA
          1 TCTATTCCAGGGATATCCCTCTCATATCCCA

        211 TCCCGGTTCG


Statistics
Matches: 61,  Mismatches: 10, Indels: 3
        0.82            0.14        0.04

Matches are distributed among these distances:
  41    1  0.02
  42   60  0.98

ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31


Consensus pattern (43 bp):   
TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA

Found at i:331 original size:16 final size:16

Alignment explanation


    Indices: 310--363  Score: 56
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        300 AATTCCGAGG

                            
        310 ATATCCCGGCTTAGGT
          1 ATATCCCGGCTTAGGT

                  ***       
        326 ATATCCTTACTTAGG-
          1 ATATCCCGGCTTAGGT

               *       *    
        341 ATAGCCCGGCTGAGGT
          1 ATATCCCGGCTTAGGT

                   
        357 ATATCCC
          1 ATATCCC

        364 ACCTGCGGAT


Statistics
Matches: 28,  Mismatches: 9, Indels: 2
        0.72            0.23        0.05

Matches are distributed among these distances:
  15   10  0.36
  16   18  0.64

ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30


Consensus pattern (16 bp):   
ATATCCCGGCTTAGGT
Done.