Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01790.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1385
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31


Found at i:352 original size:37 final size:37

Alignment explanation


    Indices: 311--384  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        301 GCCCTCGATA

                                                 
        311 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
          1 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC

                                                 
        348 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
          1 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC

        385 CAACGGGCCC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.24, C:0.11, G:0.32, T:0.32


Consensus pattern (37 bp):   
TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC

Found at i:1059 original size:136 final size:137

Alignment explanation


    Indices: 814--1100  Score: 513
    Period size: 136  Copynumber: 2.1  Consensus size: 137

        804 GAGTAGTCTC

                                                                             
        814 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
        879 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

               *   
        944 ACTGTTA
        131 ACTATTA

                         *          *                                        
        951 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                   *                                         
       1015 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1080 ACTATTA
        131 ACTATTA

              **          
       1087 CCTGAATGGGCTTA
          1 CCCAAATGGGCTTA

       1101 GGCCCAATGG


Statistics
Matches: 143,  Mismatches: 7, Indels: 1
        0.95            0.05        0.01

Matches are distributed among these distances:
 136  124  0.87
 137   19  0.13

ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Consensus pattern (137 bp):   
CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Done.