Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01808.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5890
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23


Found at i:4308 original size:32 final size:32

Alignment explanation


    Indices: 4267--4328  Score: 115
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       4257 CATCTATTTT

                                            
       4267 CATTGTTCAACTCTTTGACAACACGAAAAATC
          1 CATTGTTCAACTCTTTGACAACACGAAAAATC

                                   *      
       4299 CATTGTTCAACTCTTTGACAACATGAAAAA
          1 CATTGTTCAACTCTTTGACAACACGAAAAA

       4329 ACCAAAAGCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29


Consensus pattern (32 bp):   
CATTGTTCAACTCTTTGACAACACGAAAAATC
Done.